Publications of Dr Jano van Hemert

2012
[25]	Reducing Data Transfer in Service-Oriented Architectures: The Circulate Approach (A Barker and JB Weissman), In IEEE T Services Computing, volume 5, 2012. [bibtex]
[24]	EnzML: multi-label prediction of enzyme classes using InterPro signatures (L De Ferrari, S Aitken, J van Hemert and I Goryanin), In BMC Bioinformatics, volume 13, 2012. [bibtex]
2011
[23]	Service Infrastructure for Cross-Matching Distributed Datasets Using OGSA-DAI and TAP (Holliman, M, Alemu, T, Hume, A, van Hemert, J, Mann, RG, Noddle, K and Valkonen, L), In Astronomical Data Analysis Software and Systems XX (IN Evans, A Accomazzi, DJ Mink, AH Rots, eds.), Astronomical Society of the Pacific, volume 442, 2011. [bibtex] [pdf]
[22]	A user-friendly web portal for T-Coffee on supercomputers (J Rius, F Cores, F Solsona, van Hemert, J, J Koetsier and C Notredame), In BMC Bioinformatics, volume 12, 2011. [bibtex] [url] [doi]
[21]	Managing dynamic enterprise and urgent workloads on clouds using layered queuing and historical performance models (DA Bacigalupo, van Hemert, J, ..., GB Wills, L Gilbert and SA Jarvis), In Simulation Modelling Practice and Theory, volume 19, 2011. [bibtex]
[20]	Special Issue: Portals for life sciences—Providing intuitive access to bioinformatic tools (Gesing, S, van Hemert, J, Kacsuk, P and Kohlbacher, O), In Concurrency and Computation: Practice and Experience, Wiley, volume 23, 2011. [bibtex]
[19]	Automatically Identifying and Annotating Mouse Embryo Gene Expression Patterns (Han, L, van Hemert, JI and Baldock, RA), In Bioinformatics, volume 27, 2011. [bibtex] [url] [doi]
[18]	Generating web-based user interfaces for computational science (van Hemert, J, Koetsier, J, ..., Melato, M and Barbera, R), In Concurrency and Computation: Practice and Experience, Wiley, volume 23, 2011. [bibtex]
[17]	A Generic Parallel Processing Model for Facilitating Data Mining and Integration (L Han, CS Liew, Malcolm PA and van Hemert, JI), In Parallel Computing, Elsevier, volume 37, 2011. [bibtex] [url]
[16]	Performance database: capturing data for optimizing distributed streaming workflows (Liew, C, Atkinson, M, ..., van Hemert, J and Han, L), In Philos T R Soc A, volume 369, 2011. [bibtex] [url] [doi]
[15]	Validation and mismatch repair of workflows through typed data streams (Yaikhom, G, Atkinson, MP, van Hemert, J, Corcho, O and Krause, A), In Philos T R Soc A, volume 369, 2011. [bibtex] [url] [doi]
2010
[14]	Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles (Kitchen, R, Sabine, V, Sims, A, Macaskill, EJ, Renshaw, L, Thomas, J, van Hemert, J, Dixon, JM and Bartlett, J), In BMC Genomics, volume 11, 2010. [bibtex] [url] [doi]
[13]	Towards Optimising Distributed Data Streaming Graphs using Parallel Streams (CS Liew Liew, Malcolm, PA, van Hemert, JI and Han, L), In Data Intensive Distributed Computing, ACM, 2010. [bibtex] [url]
[12]	Molecular Orbital Calculations of Inorganic Compounds (Morrison, CA, Robertson, N, Turner, A, van Hemert, J and Koetsier, J), Chapter in Inorganic Experiments, Wiley-VCH, 2010. [bibtex]
[11]	An Open Source Toolkit for Medical Imaging De-Identification (Rodríguez González, D, T Carpenter, van Hemert, J and J Wardlaw), In European Radiology, volume 20, 2010. [bibtex] [url]
[10]	Federated Enactment of Workflow Patterns (G Yaikhom, Liew, CS, L Han, van Hemert, JI, Atkinson, MP and A Krause), In Euro-Par (D'Ambra, P, M Guarracina, D Talia., eds.), Springer, volume LNCS 6271, 2010. [bibtex]
2009
[9]	Towards a Virtual Fly Brain (Armstrong, JD), In Phil Trans R Soc A, volume 367, 2009. [bibtex] [pdf] [doi]
[8]	Automating Gene Expression Annotation for Mouse Embryo (Han, L, Atkinson, MP, Baldock, RA and van Hemert, J), In Advanced Data Mining and Applications, volume 5, 2009. [bibtex]
[7]	Rapid development of computational science portals (Koetsier, J), In Portals for Life Sciences (Gesing, S, van Hemert, J, eds.), volume 1, 2009. [bibtex]
[6]	Rapid chemistry portals through engaging researchers (Koetsier, J, Turner, A and Richardson, P), In IEEE e-Science, volume 5, 2009. [bibtex]
[5]	Using the DCC Lifecycle Model to Curate a Gene Expression Database: A Case Study (J O'Donoghue and van Hemert, J), In International Journal of Digital Curation, volume 4, 2009. [bibtex]
2008
[4]	Scientific Workflow: A Survey and Research Directions (Barker, A and van Hemert, J), In Parallel Processing and Applied Mathematics, Springer, volume 4967, 2008. [bibtex] [url]
[3]	Matching Spatial Regions with Combinations of Interacting Gene Expression Patterns (van Hemert, J and RA Baldock), In BioInformatics Research and Development (M Elloumi, \emphet al., eds.), Springer, volume 2, 2008. [bibtex]
2007
[2]	Mining spatial gene expression data for association rules (van Hemert, J and RA Baldock), In BioInformatics Research and Development (S Hochreiter, R Wagner, eds.), Springer, volume 4414, 2007. [bibtex] [pdf]
[1]	Data Integration in eHealth: A Domain/Disease Specific Roadmap (J Ure, R Proctor, M Martone, D Porteous, S Lloyd, S Lawrie, D Job, R Baldock, A Philp, D Liewald, F Rakebrand, A Blaikie, C McKay, S Anderson, J Ainsworth, van Hemert, J, I Blanquer, R Sinnott, C Barillot, F Bernard Gibaud, A Williams, M Hartswood, P Watson, L Smith, A Burger, J Kennedy, H Gonzalez-Velez, R Stevens, O Coecho, R Morton, P Linksted, M Deschenne, M McGilchrist, P Johnson, A Voss, R Gertz and J Wardlaw), In Studies in Health Technology and Informatics (N Jacq, Y Legré, H Muller, I Blanquer, V Breton, D Hausser, V Hernández, T Solomonides, M Hofman-Apitius, eds.), IOPress, volume 126, 2007. [bibtex] [pdf]