Keywords: E-Science [rss]
2012
[25] EnzML: multi-label prediction of enzyme classes using InterPro signatures (L De Ferrari, S Aitken, J van Hemert, I Goryanin), In BMC Bioinformatics, volume 13, 2012. [bib]
[24] Reducing Data Transfer in Service-Oriented Architectures: The Circulate Approach (A Barker, JB Weissman, J van Hemert), In IEEE T Services Computing, volume 5, 2012. [bib]
2011
[23] Validation and mismatch repair of workflows through typed data streams (G Yaikhom, MP Atkinson, J van Hemert, O Corcho, A Krause), In Philos T R Soc A, volume 369, 2011. [bib] [pdf] [doi]
[22] Performance database: capturing data for optimizing distributed streaming workflows (C Liew, M Atkinson, ..., J van Hemert, L Han), In Philos T R Soc A, volume 369, 2011. [bib] [pdf] [doi]
[21] A Generic Parallel Processing Model for Facilitating Data Mining and Integration (L Han, CS Liew, Malcolm PA, JI van Hemert), In Parallel Computing, Elsevier, volume 37, 2011. [bib] [pdf]
[20] Generating web-based user interfaces for computational science (J van Hemert, J Koetsier, ..., M Melato, R Barbera), In Concurrency and Computation: Practice and Experience, Wiley, volume 23, 2011. [bib]
[19] Automatically Identifying and Annotating Mouse Embryo Gene Expression Patterns (L Han, JI van Hemert, RA Baldock), In Bioinformatics, volume 27, 2011. [bib] [pdf] [doi]
[18] Special Issue: Portals for life sciences---Providing intuitive access to bioinformatic tools (S Gesing, J van Hemert, P Kacsuk, O Kohlbacher), In Concurrency and Computation: Practice and Experience, Wiley, volume 23, 2011. [bib]
[17] Managing dynamic enterprise and urgent workloads on clouds using layered queuing and historical performance models (DA Bacigalupo, J van Hemert, ..., GB Wills, L Gilbert, SA Jarvis), In Simulation Modelling Practice and Theory, volume 19, 2011. [bib]
[16] A user-friendly web portal for T-Coffee on supercomputers (J Rius, F Cores, F Solsona, J van Hemert, J Koetsier, C Notredame), In BMC Bioinformatics, volume 12, 2011. [bib] [pdf] [doi]
[15] Service Infrastructure for Cross-Matching Distributed Datasets Using OGSA-DAI and TAP (M Holliman, T Alemu, A Hume, J van Hemert, RG Mann, K Noddle, L Valkonen), In Astronomical Data Analysis Software and Systems XX (IN Evans, A Accomazzi, DJ Mink, AH Rots, eds.), Astronomical Society of the Pacific, volume 442, 2011. [bib] [pdf]
2010
[14] Federated Enactment of Workflow Patterns (G Yaikhom, CS Liew, L Han, JI van Hemert, MP Atkinson, A Krause), In Euro-Par (P D'Ambra, M Guarracina, D Talia., eds.), Springer, volume LNCS 6271, 2010. [bib]
[13] An Open Source Toolkit for Medical Imaging De-Identification (D Rodr\'\iguez González, T Carpenter, J van Hemert, J Wardlaw), In European Radiology, volume 20, 2010. [bib] [pdf]
[12] Molecular Orbital Calculations of Inorganic Compounds (CA Morrison, N Robertson, A Turner, J van Hemert, J Koetsier), Chapter in Inorganic Experiments, Wiley-VCH, 2010. [bib]
[11] Towards Optimising Distributed Data Streaming Graphs using Parallel Streams (CS Liew Liew, PA Malcolm, JI van Hemert, L Han), In Data Intensive Distributed Computing, ACM, 2010. [bib] [pdf]
[10] Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles (R Kitchen, V Sabine, A Sims, EJ Macaskill, L Renshaw, J Thomas, J van Hemert, JM Dixon, J Bartlett), In BMC Genomics, volume 11, 2010. [bib] [pdf] [doi]
2009
[9] Using the DCC Lifecycle Model to Curate a Gene Expression Database: A Case Study (J O'Donoghue, J van Hemert), In International Journal of Digital Curation, volume 4, 2009. [bib]
[8] Rapid chemistry portals through engaging researchers (J Koetsier, A Turner, P Richardson, J van Hemert), In IEEE e-Science, volume 5, 2009. [bib]
[7] Rapid development of computational science portals (J Koetsier, J van Hemert), In Portals for Life Sciences (S Gesing, J van Hemert, eds.), volume 1, 2009. [bib]
[6] Automating Gene Expression Annotation for Mouse Embryo (L Han, MP Atkinson, RA Baldock, J van Hemert), In Advanced Data Mining and Applications, volume 5, 2009. [bib]
[5] Towards a Virtual Fly Brain (JD Armstrong, J van Hemert), In Phil Trans R Soc A, volume 367, 2009. [bib] [pdf] [doi]
2008
[4] Matching Spatial Regions with Combinations of Interacting Gene Expression Patterns (J van Hemert, RA Baldock), In BioInformatics Research and Development (M Elloumi, \emphet al., eds.), Springer, volume 2, 2008. [bib]
[3] Scientific Workflow: A Survey and Research Directions (A Barker, J van Hemert), In Parallel Processing and Applied Mathematics, Springer, volume 4967, 2008. [bib] [pdf]
2007
[2] Data Integration in eHealth: A Domain/Disease Specific Roadmap (J Ure, R Proctor, M Martone, D Porteous, S Lloyd, S Lawrie, D Job, R Baldock, A Philp, D Liewald, F Rakebrand, A Blaikie, C McKay, S Anderson, J Ainsworth, J van Hemert, I Blanquer, R Sinnott, C Barillot, F Bernard Gibaud, A Williams, M Hartswood, P Watson, L Smith, A Burger, J Kennedy, H Gonzalez-Velez, R Stevens, O Coecho, R Morton, P Linksted, M Deschenne, M McGilchrist, P Johnson, A Voss, R Gertz, J Wardlaw), In Studies in Health Technology and Informatics (N Jacq, Y Legré, H Muller, I Blanquer, V Breton, D Hausser, V Hernández, T Solomonides, M Hofman-Apitius, eds.), IOPress, volume 126, 2007. [bib]
[1] Mining spatial gene expression data for association rules (J van Hemert, RA Baldock), In BioInformatics Research and Development (S Hochreiter, R Wagner, eds.), Springer, volume 4414, 2007. [bib] [pdf]
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