Keywords: E-science [rss]
2012
[35] Reducing Data Transfer in Service-Oriented Architectures: The Circulate Approach (A. Barker, J. Weissman, J. van Hemert), In IEEE T. Services Computing, volume 5, 2012. [bib]
2011
[34] Validation and mismatch repair of workflows through typed data streams (G. Yaikhom, M.P. Atkinson, J.I. van Hemert, O. Corcho, A. Krause), In Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, volume 369, 2011. [bib] [pdf] [doi]
[33] Performance database: capturing data for optimizing distributed streaming workflows (C.S. Liew, M.P. Atkinson, R. Ostrowski, M. Cole, J.I. van Hemert, L. Han), In Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, volume 369, 2011. [bib] [pdf] [doi]
[32] A Generic Parallel Processing Model for Facilitating Data Mining and Integration (L. Han, C.S. Liew, Malcolm P.A., J.I. van Hemert), In Parallel Computing, Elsevier, volume 37, 2011. [bib] [pdf]
[31] Generating web-based user interfaces for computational science (J.I. van Hemert, J. Koetsier, L. Torterolo, I. Porro, M. Melato, R. Barbera), In Concurrency and Computation: Practice and Experience, Wiley, volume 23, 2011. [bib]
[30] Automatically Identifying and Annotating Mouse Embryo Gene Expression Patterns (L. Han, J.I. van Hemert, R.A. Baldock), In Bioinformatics, volume 27, 2011. [bib] [pdf] [doi]
[29] Special Issue: Portals for life sciences---Providing intuitive access to bioinformatic tools (S. Gesing, J.I. van Hemert, P. Kacsuk, O. Kohlbacher), In Concurrency and Computation: Practice and Experience, Wiley, volume 23, 2011. [bib]
[28] Managing dynamic enterprise and urgent workloads on clouds using layered queuing and historical performance models (D.A. Bacigalupo, J.I. van Hemert, X. Chen, A. Usmani, A.P. Chester, L. He, D.N. Dillenberger, G.B. Wills, L. Gilbert, S.A. Jarvis), In Simulation Modelling Practice and Theory, volume 19, 2011. [bib]
[27] A user-friendly web portal for T-Coffee on supercomputers (J. Rius, F. Cores, F. Solsona, J.I. van Hemert, J. Koetsier, C. Notredame), In BMC Bioinformatics, volume 12, 2011. [bib] [pdf] [doi]
[26] Service Infrastructure for Cross-Matching Distributed Datasets Using OGSA-DAI and TAP (M. Holliman, T. Alemu, A. Hume, J. van Hemert, R.G. Mann, K. Noddle, L. Valkonen), In Astronomical Data Analysis Software and Systems XX (I.N. Evans, A. Accomazzi, D.J. Mink, A.H. Rots, eds.), Astronomical Society of the Pacific, volume 442, 2011. [bib] [pdf]
2010
[25] Federated Enactment of Workflow Patterns (G. Yaikhom, C.S. Liew, L. Han, J.I. van Hemert, M.P. Atkinson, A. Krause), In Euro-Par (P. D'Ambra, M. Guarracina, D. Talia., eds.), Springer, volume LNCS 6271, 2010. [bib]
[24] An Open Source Toolkit for Medical Imaging De-Identification (D. Rodr\'\iguez González, T. Carpenter, J.I. van Hemert, J. Wardlaw), In European Radiology, volume 20, 2010. [bib] [pdf]
[23] Molecular Orbital Calculations of Inorganic Compounds (C.A. Morrison, N. Robertson, A. Turner, J. van Hemert, J. Koetsier), Chapter in Inorganic Experiments, Wiley-VCH, 2010. [bib]
[22] Towards Optimising Distributed Data Streaming Graphs using Parallel Streams (C.S. Liew, P.A. Malcolm, J.I. van Hemert, L. Han), In Data Intensive Distributed Computing in conjunction with the 19th International Symposium on High Performance Distributed Computing, ACM, 2010. [bib] [pdf]
[21] Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles (R. Kitchen, V. Sabine, A. Sims, E.J. Macaskill, L. Renshaw, Jeremy Thomas, J.I. van Hemert, J.M. Dixon, J. Bartlett), In BMC Genomics, volume 11, 2010. [bib] [pdf] [doi]
[20] TOPP goes Rapid (S. Gesing, J.I. van Hemert, J. Koetsier, A. Bertsch, O. Kohlbacher), In Cluster Computing and the Grid, IEEE International Symposium on, IEEE Computer Society, 2010. [bib] [doi]
[19] Resource management of enterprise cloud systems using layered queuing and historical performance models (D.A. Bacigalupo, J. van Hemert, A. Usmani, D.N. Dillenberger, G.B. Wills, S.A. Jarvis), In IEEE International Symposium on Parallel Distributed Processing, 2010. [bib] [doi]
2009
[18] Using the DCC Lifecycle Model to Curate a Gene Expression Database: A Case Study (J. O'Donoghue, J.I. van Hemert), In International Journal of Digital Curation, volume 4, 2009. [bib]
[17] Rapid chemistry portals through engaging researchers (J. Koetsier, A. Turner, P. Richardson, J.I. van Hemert), In Fifth IEEE International Conference on e-Science (A Trefethen, D De Roure, eds.), 2009. [bib]
[16] Rapid development of computational science portals (J. Koetsier, J.I. van Hemert), In Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences (S. Gesing, J.I. van Hemert, eds.), 2009. [bib] [pdf]
[15] Giving Computational Science a Friendly Face (J.I. van Hemert, J. Koetsier), In Zero-In, volume 1, 2009. [bib] [pdf]
[14] Automating Gene Expression Annotation for Mouse Embryo (L. Han, J.I. van Hemert, R.A. Baldock, M.P. Atkinson), In Advanced Data Mining and Applications, 5th International Conference, Springer, volume 5678, 2009. [bib] [doi]
[13] Portals for Life Sciences---a Brief Introduction (S. Gesing, O. Kohlbacher, J.I. van Hemert), In Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences (S. Gesing, J.I. van Hemert, eds.), 2009. [bib] [pdf]
[12] Proceedings of the IWPLS09 International Workshop on Portals for Life Sciences, (S. Gesing, J.I. van Hemert, eds.), CEUR Workshop Proceedings, 2009. [bib] [pdf]
[11] A model of social collaboration in Molecular Biology knowledge bases (L. De Ferrari, S. Aitken, J.I. van Hemert, I. Goryanin), In Proceedings of the 6th Conference of the European Social Simulation Association (ESSA'09) (Bruce Edmonds, Nigel Gilbert, eds.), European Social Simulation Association, 2009. [bib]
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